Schedule


Week 1

DayTimeEvent
Monday7:30-8:30 Breakfast - Daily Bread Café
8:30-8:40 Opening and Traditional Territories Acknowledgements (Portet & Skopalek)(Room SJC 118)
8:40-10:00 Lecture 1 - Stetefeld 1 - Introduction to protein structure (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 2 - Newby 1 - Brownian motion: physics mathematics and history (Room SJC 118)
12:00-13:00 Project - Presentation of project topics (Room SJC 118)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 3 - Cytrynbaum 1 - Conservation laws: compartment models and diffusion-advection equations (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Lecture 4 - Madzvamuse 1 - Derivation of reaction-diffusion systems on continuously deforming domains and surfaces (Room SJC 118)
17:30-18:30 Reception - Daily Bread Café
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Tuesday7:30-8:30 Breakfast - Daily Bread Café
8:30-10:00 Lecture 5 - Lin 1 - Cell migration - experiments (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 6 - Newby 2 - Stochastic differential equations (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 7 - Cytrynbaum 2 - Stochastic models for simple reactions and the Kolmogorov Forward Equation (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Lecture 8 - Madzvamuse 2 - Finite element methods for reaction-diffusion systems on continuously deforming domains and surfaces (Room SJC 118)
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Wednesday7:30-8:30 Breakfast - Cross Common Room (SJC 108)
8:30-10:00 Lecture 9 - McKenna 1 - Introduction to DNA - RNA (Room SJC 118)
10:00-10:30 Coffee Break - Cross Common Room (SJC 108)
10:30-12:00 Lecture 10 - Newby 3 - State space models: bayesian methods and applications to tracking in cells (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Cross Common Room (SJC 108)
14:00-15:30 Lecture 11 - Cytrynbaum 3 - Stochastic and deterministic models of cytoskeleton polymers (Room SJC 118)
15:30-16:00 Coffee Break - Cross Common Room (SJC 108)
16:00-17:30 Lecture 12 - Ferrari 1 - Introduction to graph theory (Room SJC 118)
18:30-19:30 Dinner - Cross Common Room (SJC 108)
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Thursday7:30-8:30 Breakfast - Daily Bread Café
8:30-10:00 Lecture 13 - Chan 1 - Introduction to cancer biology (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 14 - Liao 1 - Parameter Estimation (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 15 - Arsuaga 1 - Identifying cancer chromosome aberrations using topological data analysis and graph theory (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Lecture 16 - Soteros 1 - Introduction to polymer modelling and some Monte Carlo methods (Room SJC 118)
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Friday7:30-8:30 Breakfast - Daily Bread Café
8:30-10:00 Lecture 17 - Ferrari 2 - Graph theory concepts and applications to cancer (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 18 - Soteros 2 - Using polymer models to explore DNA topology questions (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 19 - Madzvamuse 3 - Solving reaction-diffusion systems using FeNiCs (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
18:30-19:30 Dinner - BBQ - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Saturday10:00-13:30 Brunch - Daily Bread Café
All Day Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
17:00-19:15 Dinner - Daily Bread Café
Sunday10:00-13:30 Brunch - Daily Bread Café
All Day Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
17:00-19:15 Dinner - Daily Bread Café

Week 2

DayTimeEvent
Monday7:30-8:30 Breakfast - Daily Bread Café
8:30-10:00 Lecture 20 - Dao Duc 1 - Introduction to metrics for biological shape analysis and dimensionality reduction (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 21 - Hillen 1 - Transport equations in biology (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 22 - Liao 2 - Evolutionary algorithms (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Tuesday7:30-8:30 Breakfast - Daily Bread Café
8:30-10:00 Lecture 23 - Dao Duc 2 - (Wenjun Zhao): Optimal Transport Wasserstein metrics and application to protein and cell shapes (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 24 - Hillen 2 - Anisotropic diffusion (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 25 - Liao 3 - Identifiability (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Wednesday7:30-8:30 Breakfast - Galleria
8:30-10:00 Lecture 26 - Stetefeld 2 - Introduction to cryogenic electron microscopy (cryo-EM) and tomography (cryo-ET) (Room SJC 118)
10:00-10:30 Coffee Break - Galleria
10:30-12:00 Lecture 27 - Dao Duc 3 - Mathematics of 3D shape reconstruction for cryo-EM and cryo-ET (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Galleria
14:00-15:30 Lecture 28 - Hillen 3 - Modelling of glioma with anisotropic diffusion (Room SJC 118)
15:30-16:00 Coffee Break - Galleria
16:00-17:30 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
18:30-19:30 Dinner - Galleria
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Thursday7:30-8:30 Breakfast - Daily Bread Café
8:30-10:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-17:30 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Submission of project reports - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Friday7:30-8:30 Breakfast - Daily Bread Café
9:00-9:20 Project 8 - Beaudin Kankanamge Rim Velidi (Room SJC 118)
9:20-9:40 Project 6 - Nie Omer Ouema Schimer Wu (Room SJC 118)
9:40-10:00 Project 2 - Bravo Mohammadi Nyaweni Rohden Vaziry (Room SJC 118)
10:00-10:20 Project 11 - Graham Nambooze Sharma (Room SJC 118)
10:20-10:40 Project 5 - Abrams Cunnuk Numedahl Mayala Rickes Sonnet (Room SJC 118)
10:40-11:00 Coffee Break - Daily Bread Café
11:00-11:20 Project 1 - Lawson Mthombeni Sun Wang Yue (Room SJC 118)
11:20-11:40 Project 9 - Buklemishev Chazuka Mollaheydar Opoku Palmerley (Room SJC 118)
11:40-12:00 Project 10 - Binjibon Ibrahim Juma Loureaux (Room SJC 118)
12:00-12:20 Project 3 - Atsu Gu Qwabe Wang Yigit (Room SJC 118)
12:20-12:40 Project 12 - Chango Djuikem Farjam Karoobi (Room SJC 118)
12:40-13:00 Closing remarks (Room SJC 118)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 De-brief session
18:00-19:00 Dinner - Daily Bread Café
Saturday10:00-13:30 Brunch - SJC Residence Dining Hall
All Day Departure
17:00-19:15 Dinner - SJC Residence Dining Hall