Schedule

Week 1

DayTimeEvent
Monday8:30-10:00 Lecture 1 - Stetefeld 1 - Introduction to protein structure (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 2 - Newby 1 - Brownian motion: physics mathematics and history (Room SJC 118)
12:00-13:00 Project - Presentation of project topics (Room SJC 118)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 3 - Cytrynbaum 1 - Conservation laws: compartment models and diffusion-advection equations (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Lecture 4 - Madzvamuse 1 - Analysis of reaction-diffusion systems on stationary domains (Room SJC 118)
17:30-18:30 Reception - Daily Bread Café
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Tuesday8:30-10:00 Lecture 5 - Lin 1 - Cell migration - experiments (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 6 - Newby 2 - Stochastic differential equations (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 7 - Cytrynbaum 2 - Stochastic models for simple reactions and the Kolmogorov Forward Equation (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Lecture 8 - Madzvamuse 2 - Numerical methods for reaction-diffusion system on stationary domains (Room SJC 118)
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Wednesday8:30-10:00 Lecture 9 - McKenna 1 - Introduction to DNA - RNA (Room SJC 118)
10:00-10:30 Coffee Break - Cross Common Room (SJC 108)
10:30-12:00 Lecture 10 - Newby 3 - State space models: bayesian methods and applications to tracking in cells (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Cross Common Room (SJC 108)
14:00-15:30 Lecture 11 - Cytrynbaum 3 - Stochastic and deterministic models of cytoskeleton polymers (Room SJC 118)
15:30-16:00 Coffee Break - Cross Common Room (SJC 108)
16:00-17:30 Lecture 12 - Ferrari 1 - Introduction to graph theory (Room SJC 118)
18:30-19:30 Dinner - Cross Common Room (SJC 108)
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Thursday8:30-10:00 Lecture 13 - Chan 1 - Introduction to cancer biology (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 14 - Liao 1 - Parameter Estimation (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 15 - Arsuaga 1 - Identifying cancer chromosome aberrations using topological data analysis and graph theory (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Lecture 16 - Soteros 1 - Introduction to polymer modelling and some Monte Carlo methods (Room SJC 118)
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Friday8:30-10:00 Lecture 17 - Ferrari 2 - Graph theory concepts and applications to cancer (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 18 - Soteros 2 - Using polymer models to explore DNA topology questions (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 19 - Madzvamuse 3 - High performance numerical methods for PDEs (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
SaturdayAll Day Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
SundayAll Day Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)

Week 2

DayTimeEvent
Monday8:30-10:00 Lecture 20 - Dao Duc 1 - Metrics statistics and dimensionality reduction methods for biological shape analysis - Part 1 (Wenjun Zhao) (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 21 - Hillen 1 - Transport equations in biology (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 22 - Liao 2 - Evolutionary algorithms (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Tuesday8:30-10:00 Lecture 23 - Dao Duc 2 - Metrics statistics and dimensionality reduction methods for biological shape analysis - Part 2 (Room SJC 118)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-12:00 Lecture 24 - Hillen 2 - Anisotropic diffusion (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 Lecture 25 - Liao 3 - Identifiability (Room SJC 118)
15:30-16:00 Coffee Break - Daily Bread Café
16:00-17:30 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Wednesday8:30-10:00 Lecture 26 - Stetefeld 2 - Introduction to cryogenic electron microscopy (cryo-EM) and tomography (cryo-ET) (Room SJC 118)
10:00-10:30 Coffee Break - Galleria
10:30-12:00 Lecture 27 - Dao Duc 3 - Introduction to Optimal Transport Wasserstein metrics and application to protein and cell shapes (Room SJC 118)
12:00-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Galleria
14:00-15:30 Lecture 28 - Hillen 3 - Modelling of glioma with anisotropic diffusion (Room SJC 118)
15:30-16:00 Coffee Break - Galleria
16:00-17:30 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
18:30-19:30 Dinner - Galleria
19:30-21:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Thursday8:30-10:00 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
10:00-10:30 Coffee Break - Daily Bread Café
10:30-13:00 Supervised Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
13:00-14:00 Lunch - Daily Bread Café
14:00-17:30 Project - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
18:30-19:30 Dinner - Daily Bread Café
19:30-21:00 Project - Submission of project reports - Rooms SJC 118 - SJC 112 - SJC 113 - SJC 201 - SJC 202 - SJC 204 - SJC 312 (only for hybrid sessions)
Friday9:00-10:30 Presentation of projects (Room SJC 118)
10:30-11:00 Coffee Break - Daily Bread Café
11:00-13:00 Presentation of projects (Room SJC 118)
13:00-14:00 Lunch - Daily Bread Café
14:00-15:30 De-brief session and Closing remarks (Room SJC 118)
SaturdayAll Day Departure