3MC Quantitative Biology School
Material used for teaching the course, including slides and R code.
African Mathematical School on Quantitative Biology: Applications in Epidemiology, Ecology and Cancer
Here are some slides and material for the 3MC African Mathematical School on Quantitative Biology: Applications in Epidemiology, Ecology and Cancer, held at Northwest University (Potchefstroom) in February 2024.
On the GitHub version of the page, you have access to all the files. You can also download the entire repository by clicking the buttons on the left. (You can also of course clone this repo, but you will need to do that from the GitHub version of the site.)
Feel free to use the material in these slides or in the folders. If you find this useful, we will be happy to know.
Slides Inger
Html produced from Rmarkdown files. You can find the Rmarkdown files in the inger directory.
- 1.-Spatial-Data-Science
- 3.-Types-of-Spatial-Data
- 4.-Autocorrelation
- 5.-Autocorrelation-Function
- 6.-Semi-variogram-and-Co-variogram
- 7.-Covariance-and-Semi-variogram-Models
- 8.-Random,-Aggregated,-and-Regular-Patterns
- 9.-Testing-for-CSR
- Uncertainty and sensitivity analysis by Dr Raeesa Manjoo-Docrat
Slides Jacek
A short introduction to partial differential equations with applications in life sciences
Slides James
You can find James’ slides on his web page.
Slides Julien
Please note that at present, the slides are work in progress. I will be updating them as the course progresses.
- course-01-part-01-introduction-math-epi
- course-01-part-02-single-location-ODE
- course-02-models-incorporating-space
- course-03-stochastic-and-advanced-models
I have some “vignettes” about R here. Beware, some of them are not finished yet.
Slides Nikos
Mathematical Oncology - A Differential Equation approach to Cancer Growth and Metastasis
Nikos’ subdirectory also contains a variety of material (files, movies).
Slides Patrick
See the slides here.